Kybernetika 62 no. 4, 618-642, 2026

From deterministic to probabilistic modeling of algal growth under light/dark cycles: A method for density computation

Juan Carlos Cortés López, Ana Navarro-Quiles, Štěpán Papáček and Cristina Pérez DiukinaDOI: 10.14736/kyb-2026-4-0618

Abstract:

This work addresses the modeling of algal growth under intermittent light conditions by extending the deterministic Photosynthetic Factory (PSF) model into a probabilistic framework. Motivated by experimental evidence that the frequency of light/dark cycles is not constant due to the inherent randomness of hydrodynamic mixing and other physical processes, the PSF model, representing one of the widely used photosynthetic-unit-based models, is first reduced to a single ordinary differential equation and then reformulated as a random differential equation, where the cycle period is treated as a continuous random variable. A computationally relevant contribution of this study is the partition of the time domain for a piece-wise transformation method that enables the analytical computation of probability density functions for central quantities such as the proportion of active photosynthetic units and the average growth rate. A key contribution of this study is the development of a recursive transformation method that enables the analytical computation of probability density functions for central quantities such as the proportion of active photosynthetic units and the average growth rate. This method leverages the structure of the reduced PSF model and the piecewise nature of the input signal to propagate uncertainty through the system. Beyond computational considerations, a key advantage of the approach is that it provides direct access to the probability density functions and their analytical properties, which are generally not available from Monte Carlo simulations alone. This method leverages the structure of the reduced PSF model and the piecewise nature of the input signal to efficiently propagate uncertainty through the system, avoiding the computational burden of Monte Carlo simulations. Numerical experiments illustrate how uncertainty in cycle frequency can influence both transient and long-term system behavior, and how the proposed approach allows for accurate quantification of these effects. The resulting framework offers a tractable and interpretable way to incorporate randomness into biological models of light-driven growth, with potential applications in the design and analysis of photobioreactors operating under variable environmental conditions.

Keywords:

light/dark cycles, uncertainty, random process, probability density function, random differential equations, photosynthetic factory model, algal growth

Classification:

93C10, 37N25, 34F05

References:

  1. S. Abu-Ghosh, D. Fixler, Z. Dubinsky and D. Iluz: Flashing light in microalgae biotechnology. Bioresource Technol. 203 (2016), 357-363.   CrossRef
  2. C. Andreu-Vilarroig, J. C. Cortés, A. Navarro-Quiles and et al.: A random differential equation approach for modeling the growth of microalgae in photobioreactors. Bull. Math. Biol. 88 (2026), 47.   DOI:10.1007/s11538-026-01609-3
  3. C. Brindley, N. Jiménez-Ruíz, F. G. Acién and J. M. Fernández-Sevilla: Light regime optimization in photobioreactors using a dynamic photosynthesis model. Algal Res. 16 (2016), 399-408.   DOI:10.1016/j.algal.2016.03.033
  4. G. Casella and R. L. Berger: Statistical Inference. Second edition. Duxbury, England 2002.   CrossRef
  5. S. Čelikovský, Š. Papáček, A. Cervantes-Herrera and J. Ruiz-Leon: Singular perturbation based solution to optimal microalgal growth problem and its infinite time horizon analysis. IEEE Trans. Automat. Control 55 (2010), 3, 767-772.   DOI:10.1109/TAC.2010.2040498
  6. A. Chiarini and M. Quadrio: The light/dark cycle of microalgae in a thin-layer photobioreactor. J. Appl. Phycol. 33 (2021), 183-195.   DOI:10.1007/s10811-020-02310-1
  7. P. H. C. Eilers and J. C. H. Peeters: A model for the relationship between light intensity and the rate of photosynthesis in phytoplankton. Ecol. Model. 42 (1988), 199-215.   DOI:10.1016/0304-3800(88)90057-9
  8. I. S. Gradshteyn and I. M. Ryzhik: Table of Integrals, Series, and Products. Seventh edition. Academic Press, Amsterdam 2007.   CrossRef
  9. C. Inostroza, L. Papáček and J. M. Fernández-Sevilla et al.: Optimization of thin-layer photobioreactors for the production of microalgae by integrating fluid-dynamic and photosynthesis rate aspects. J. Appl. Phycol. 35 (2023), 2111-2123.   DOI:10.1007/s10811-023-03050-8
  10. M. Janssen: Cultivation of microalgae: effect of light/dark cycles on biomass yield. Dissertation, Wageningen Univ. 2002. Available at:   https://edepot.wur.nl/121273.
  11. Mathematica: Wolfram Research, Inc.    https://www.wolfram.com/mathematica/
  12. T. M. Mata, A. Martins and N. S. Caetano: Microalgae for biodiesel production and other applications: A review. Renewable Sustainable Energy Rev. 14 (2010), 1.   DOI:10.1016/j.rser.2009.07.020
  13. J. C. Merchuk, M. Ronen, S. Giris and S. M. Arad: Light/dark cycles in the growth of the red microalga Porphyridium sp. Biotechnol. Bioengrg. 59 (2000), 6, 705-710.   CrossRef
  14. K. Mulluye, Y. Bogale, D. Bayle and Y. Atnafu: Review on microalgae potential innovative biotechnological applications. Biosci. Biotechnol. Res. Asia 20 (2023), 1.   CrossRef
  15. T. Neckel and F. Rupp: Random Differential Equations in Scientific Computing. De Gruyter, Versita 2013.   CrossRef
  16. Š. Papáček, S. Čelikovský, D. Štys and J. J. Ruiz-León: Bilinear system as a modelling framework for analysis of microalgal growth. Kybernetika 43, No. 1 (2007), 1-20.   CrossRef
  17. Š. Papáček, S. Čelikovský, B. Rehák and D. Štys: Experimental design for parameter estimation of two time-scale model of photosynthesis and photoinhibition in microalgae. Math. Comput. Simul. 80 (2010), 1302-1309.   CrossRef
  18. S. Papáček, J. Jablonsky and K. Petera: Advanced integration of fluid dynamics and photosynthetic reaction kinetics for microalgae culture systems. BMC Syst. Biol. 12 (2018), Suppl. 5, 93.   CrossRef
  19. B. Rehák, S. Čelikovský and Š. Papáček: Model for Photosynthesis and Photoinhibition: Parameter Identification Based on the Harmonic Irradiation $O_2$ Response Measurement. Joint Special Issue of TAC IEEE and TCAS IEEE (2008), pp. 101-108.   CrossRef
  20. P. Rudnicki, X. Gao, B. Kong and R. D. Vigil: A comparative study of photosynthetic unit models for algal growth rate and fluorescence prediction under light/dark cycles. Algal Res. 24 (2017), 227-236.   DOI:10.1016/j.algal.2017.03.028
  21. T. T. Soong: Random Differential Equations in Science and Engineering. Academic Press, 1973.   CrossRef
  22. M. R. Tredici: Photobiology of microalgae mass cultures: understanding the tools for the next green revolution. Biofuels 1 (2010), 1, 143-162.   DOI:10.4155/bfs.09.10
  23. C. Vejrazka et al.: Photosynthetic efficiency and oxygen evolution of \textit{Chlamydomonas reinhardtii} under continuous and flashing light. Appl. Microbiol. Biotechnol. 97 (2013), 4, 1523-1532.   DOI:10.1007/s00253-012-4390-8
  24. S.-K. Wang, A. R. Stiles, C. Guo and C.-Z. Liu: Microalgae cultivation in photobioreactors: An overview of light characteristics. Engrg. Life Sci. 14 (2014), 6, 550-559.   DOI:10.1002/elsc.201300170
  25. X. Wu and J. C. Merchuk: A model integrating fluid dynamics in photosynthesis and photoinhibition processes. Chem. Engrg. Sci. 56 (2001), 3527-3538.   DOI:10.1016/S0009-2509(01)00048-3